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We first discuss multiprocessing issues, and then multithreading.
We have issues running several `pandora map` jobs concurrently with the `--discover` flag set (a sort of multiprocessing). It is no…
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Hi,
I run unitig-counter on 50 assemblies of H. pylori genome (.fna). I installed unitig-counter by conda.
unitig-counter -strains allasia_list.txt -output output -nb-cores 4
But I could not …
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This is not really an issue - just a way of documenting `pandora compare` RAM usage across commits and to know if we need to improve or not.
**Dataset for massif profiling:**
downsampled klebs dat…
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There are two things that need to be done before I can start working on this:
- [ ] Merging the current `dev` branch onto `master` (after #243 is merged into `dev`)
- [ ] Tag a release after the a…
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With this, we don't need internet connection to compile `pandora` (`make`), and GATB is downloaded when `pandora` is cloned, not on every build. We still need internet connection to prepare the build …
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Panaroo is great to use but I wish to check I am using it correctly on 411 Mycoplasma spp genomes. I am getting many lines in my print out that start with "invalid gene!". I generated the input .gff f…
Walwa updated
2 years ago
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Hi,
I would like to run Simka on multiple samples with the -max-reads option to deal with various sequencing depth.
However, the samples have also various read length.
I guess this may slighlty …
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Je viens de remarquer que depuis 4609ce11 le nom de fichier contenant le transcrit est en dur. Non il faut bien que ce soit un paramètre.
Il n'y a pas besoin d'avoir un autre fichier pour le revers…
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Hi,
I was tempted into trying kmtricks after the nice talk of @pierrepeterlongo at DSB2021.
My use case is the following. I'm trying to find patterns of shared k-mer in a somewhat large genomic…
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Hi, looking forward to using your tool, just an issue with getting it running. I had an issue with directories not being complete as posted by someone else the output/misc, though that was resolved.
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