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Hi,
I am currently trying to combine my processed Visium and scRNAseq data using the multimodal run. Following the tutorial I was able to process the data and was able to see the combine feature (G…
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Hi,
I am trying to access the monarch-py api and I'm running into some problems. For context, the end goal is that I would like to query monarch with a phenotype term and get back a list of all gen…
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Please provide as much information as you can:
* **GO term ID and Label**
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* negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (GO:2001268)
…
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The following table lists all the genes in curation sessions that aren't used in any annotations. The table was generated by a script that searches the PHI-Canto JSON export. It's up to date as of 1 D…
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Thanks for the tool it sounds very useful! I want to use it to annotate the viruses I find in my metagenomes but I have a few questions concerning the use of the tool:
1) In the literature (example…
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The current GRCh38 RefSeq annotation (GCF_000001405.40-RS_2023_10) has [368 transcripts for BRCA1](https://www.ncbi.nlm.nih.gov/datasets/gene/id/672/products/) - up from 6 the previous version.
I c…
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stats are here: https://docs.google.com/spreadsheets/d/1kTSYUTrgDXpXlXJpekG3ifRCbjjIqinnI3vH3DgU_BU/edit?gid=0#gid=0
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### Ask away!
This is my first time running this workflow and my DGE analysis tsv files (for example results_dge.tsv) aren't incorporating the gene names in the gene_name column. Instead, the files d…
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https://www.pombase.org/gene/SPAC22G7.06c
Some of these annotations appear to be incorrect. A bit of detective work required....
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Hi! Thank you so much for this great tool. I'd like to know how it is possible to get information about enriched intergenic regions using Skipper.
Thanks!
Vanda