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Hi,
I try to import the example dataset download (MZTwins) from http://labcfg.ibch.ru/tcr.html. It showns the following error. Could someone help me?
Thanks.
![image](https://user-images.gith…
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Hello
I just noticed a strange absence in the set of V gene segments (the HUMAN_TRBV vector): it seems that the TRBV6-8 and TRBV6-9
( two gene segments coding those specific T-cell receptor bet…
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Hi,
we found inconsistent annotation of gene names between MiXCR outputs and tcR. For example, one segment in the V region is named as "TRAV38-2DV8" in our MiXCR output. We counted the number of clon…
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https://github.com/imminfo/tcr/blob/96c36080237f3c3087147dbcd37223414fcc506e/R/plots.R#L603
Think there's a typo, _group_ rather than _Group_ as an aesthetic. But changing that means that each gro…
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Hi,
I'm using parse.folder as follows:
MT
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Hey, I was using your cosine.similiarity function and your function seems to lack a squareroot in the denominator:
Instead of:
function (.alpha, .beta, .do.norm = NA, .laplace = 0)
{
.alpha
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I have problems to parse immunoseq data for the tcR package.
I read issue #74 and #83 and already applied to modification to parse.immunoseq3 as suggested to avoid the error message regarding the cou…
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Hi Vadim,
I have a question about a tcR function 'find.clonotype'. I am reading through tcR vignette. One of the examples is to show how to search for a target CDR3 sequence. As shown in the vignet…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/snaketron/IgGeneUsage
Confirm the following by ed…
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The current function seems to result in errors when there are no singletons but duplicates. It runs the third part of the code (i.e. else) but the value for f1 is NA since this is the value of counts …