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**Steps to Reproduce**
1. Toggle to Macromolecules mode
2. Load using Paste from clipboard way: `PEPTIDE1{D-gGlu}$$$$V2.0`
![image](https://github.com/user-attachments/assets/a0b3f631-47da-473d-b0f…
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**Steps to Reproduce**
1. Toggle to Macromolecules mode
2. Load using Paste from clipboard way: `RNA1{R(bla-bla-bla)p}$$$$V2.0`
![image](https://github.com/user-attachments/assets/f3e15f1d-e0b7-4a9…
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**Steps to Reproduce**
1. Go to Macromolecules mode - Flex mode
2. Load using Paste from clipboard way following sequence: `AT`
![image](https://github.com/user-attachments/assets/088bdbf7-54da-441…
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**Steps to Reproduce**
1. Toggle to Macromolecules mode
2. Load using Paste from clipboard way: `PEPTIDE1{([Aad]+[Abu]+[Aca]+[Aib]+[Apm])'5-i'}$$$$V2.0`
![image](https://github.com/user-attachments…
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This is an interesting article that describes a well-engineered, robust/reproducible, and very accessible (Jupyter notebooks) Poisson-Boltzmann solver. The authors have done an excellent job describin…
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**Steps to Reproduce**
1. Go to Macromolecules mode - Sequence mode
2. Go to Library and click New preset
3. Go to Sugars section and click any sugar (R - in my cases)
4. Go to Bases section and c…
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I have long arrays of short numbers in JSON. To give a small example:
[3.1, 15.2, -80.6, 40.7]
cbor.me converts it to 37 bytes (more than in the input!):
```
84 # array…
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**Steps to Reproduce**
1. Go to Macromolecules mode - Flex mode
2. Load using paste from clipboard IDT type: `CHEM1{[A6OH]}|PEPTIDE1{A}$CHEM1,PEPTIDE1,1:R4-1:R1$$$V2.0`
![image](https://github.com/…
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**Steps to Reproduce**
1. Send IDT string (f.e. `/52MOErA/*/i2MOErC/*/32MOErT/`) to convert api without `"input_format": "chemical/x-idt"` parameter
**Expected behavior**
Indigo converts string i…
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These would be easily calculated if the atomic gradients were stored in the atom group. Solving issue #61 would allow to solve this easily, too.
Meanwhile, a `f_cvc_fit_gradients` feature could be us…