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Hi Sahir,
First of all thanks for creating such a fantastic package! I've been trying and failing to edit some of the code in the package for a while now in order to recolour the SNP points accord…
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When I am running the process to the step of STAARpipeline/0.2.1Varinfo_gds.R, if I provide the chromosome as a sex chromosome, it will automatically recognize it as chrNA. I would like to know if thi…
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## `README.md` with commands and analyses
**2/2**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
| Commands for Step 1.1 | 0.33 | 0.33 |
| Commands for Step 2.1 | 0.3…
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Hi Marc-André,
I tried katcher and add_pvalue and they work fine, thank you.
However when I try to run `bedtools bamtobed` on the output of add_pvalue, it does not recongnize the value in the PV tag…
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Is it possible to add annotation to a multitraits plot? I get the annotations of significant genes in the multi-tracks, but is there a way to also include them in a single figure (and maybe even have …
rb643 updated
1 month ago
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Hi, there
Please see the screenshot below. The phenotypes are not sorted. They are sorted in my pheno-list.json file. This makes it difficult to find a target phenotype.
![image](https://github.…
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Is it possible to work with a different genome species? Can I incorporate an alternative annotation file for plotting?
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Can you please help me understanding the error thrown by CMplot?
There is my code:
data2
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I am a researcher in plant genetics, currently endeavoring to understand the correlation between specific loci and phenotypic traits in plants. In my research, I have collected data on a series of loc…
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All GWAS models in GAPIT appear to be giving very different results from previous analysis of the same files just a few weeks ago. In each case, there are many SNPs, possibly hundreds above the P