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I am trying to upload ASVs OTUs and custom taxonomy - getting error "OTUs are in the OTU table but are not present in the PICRUSt 16S normalization table". Is Burrito working with ASVs?
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Hi, there,
It is easy to reproduce example of ggrarecurve, however, when I try to create the phyloseq object based on my own data, errors come out. I wonder how to create such a formal phyloseq obj…
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I have been coming across some confusing results in some datasets recently (that may be real but I am looking into stuff anyways). While I don't think this is likely the problem, I have recently notic…
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Hi
I can't seem to upload my otu_table.biom file on the Microbiome Explorer
it sent the Error
```
Warning: Error in if: missing value where TRUE/FALSE needed
45:
2: shiny::runApp
1: …
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* I think this is due to filling the otu lookup via paginated results (50) whereas sample otu requests get as many ids as corresponds to a query (can include more than the 50 otus stored).
* Need to…
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Hi,
there is a small part of my otu_table, and the first column is otu's id, the first row is sample's name.
ID | E974 | E1580 | E1518 | E1550
-- | -- | -- | -- | --
4479944 | 1 | 0 | 0 | 0
5295…
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Hey,
I am wondering if there is any documentation on how to map BIOM format (OTU tables) to Darwin Core?
I have seen some example like [BIOWIDE eDNA Fungi dataset](https://www.gbif.org/datase…
ymgan updated
4 years ago
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otu_mat %>% tibble::column_to_rownames("otu")
tax_mat % tibble::column_to_rownames("otu")
samples_df%tibble::column_to_rownames("sample")
otu_mat
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Hi,
I'm using SourceTracker in R for the first time and can't work out an error I'm getting when using the sourcetracker() function on my own data (works for example data though):
Error in if (s…
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Hi everyone,
I'm currently importing the QIIME2 outputs to phyloseq, as described [here](https://gist.github.com/erictleung/eda33bceceebb190eb9a44c93a077d32). Afterwards, I'm importing the data as …