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The Nature paper says that by using the software graph_peak_caller, we can do ChiP-Seq analysis on genome graphs. However, the original graph_peaker_caller paper says "Graph Peak Caller was developed …
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Hi there,
Thanks for this great tool. I noticed that, in both the HPRC reference release paper and the original paper describing this tool, you employ complex pre and post pangenie variant filterin…
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### 1. Lesson Topic
Introduction to Genome Mining
### 2. Lesson Language
English
### 3. Draft materials
https://czirion.github.io/genome-mining-workshop/
### 4. Requirements for existing materia…
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Hello,
> [!NOTE]\
> All comparisons I made here are on the chr21, between the PGGB graph and the .full MGC one build with GRCh38 as reference.
I was wondering about the completeness of the MGC …
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Hi, I run the pipeline to with ONT and Strand-seq reads of HG002. It leads to this error:
> Error in rule minimap_contig_to_known_reference_alignment:
jobid: 97
output: output/alignments/…
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### Version
1
### DataCap Applicant
Neal
### Project ID
17
### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### D…
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Hi there,
when running
```
wfmash pangenome.fa.gz pangenome.fa.gz --threads 2
```
I get
```
[mashmap] MashMap v3.1.1
[mashmap] Reference = [pangenome.fa.gz]
[mashmap] Query = [pangeno…
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### Data Owner Name
Human Pangenome Reference Consortium
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
#…
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### Data Owner Name
Human Pangenome Reference Consortium
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
#…
-
### Data Owner Name
Human Pangenome Reference Consortium
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
#…