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Zhang et al. 2021 (https://doi.org/10.1038/s41427-021-00320-0):
This paper has reviewed several simulations to study the interaction of nanoparticles (NPs) and membrane. This paper said there are se…
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At our last check-in, Peter suggested I put together a tutorial series for getting started with MD in OpenMM; something similar to [Justin Lemkul's tutorials for GROMACS](http://www.mdtutorials.com/gm…
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1.) Current design does not contain College
Add a college field to filter the list of degree programs that will show under the degree program field (autocomplete)
2.) Current design has no uniform…
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I was looking at notochord and see:
1. notochord part of axial skeletal system
2. axial skeletal system has part skeletal joint
But the notochord exists before there are any skeletal joints, ri…
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**TLTR**
*I would like to implement a problem type for differential inclusions (aka differential equations with inequalities).
Is that welcome/fitting to SciML?*
# Terminology
There are mi…
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"msas": "Structural Biology and Molecular Biophysics"
"msid": "93686"
"preprintDoi": "10.1101/2023.08.22.554292"
"Reviewed Preprint posted": "2024-01-05"
"Sent for peer review": "2023-11-13"
"Posted t…
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**Project Management - kanban applications**
1. [https://www.taiga.io](https://www.taiga.io) - FOSS. can try on demo site.
2. [https://restya.com/board](https://restya.com/board) - FOSS. can try…
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"msas": "Structural Biology and Molecular Biophysics"
"msid": "93013"
"preprintDoi": "10.1101/2023.09.10.557040"
"Reviewed Preprint posted": "2023-12-20"
"Sent for peer review": "2023-10-11"
"Posted t…
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Here's some notes that I have for the current implementation of the Molecule class:
1. I'm noticing some methods associated with the Molecule superclass that utilize `self.data` (see below), which…
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I think it's important to contextualize diffexp results by what these genes _do_, biologically. There are multiple "levels" at which we could support this:
1) Just link out to wikigene / human prote…