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> Taxonomic assignment is the core of targeted metagenomics approaches that aims to assign sequencing reads to their corresponding taxonomy. Sequence similarity searching and machine learning (ML) are…
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Hi!
We've tried to use FACETS to call genome wide CNAs in a paired tumor-normal case, but we are not sure about optimizing parameters like ndepth, snp.nbhd etc. to get reliable segmentation and CN …
BZ532 updated
5 years ago
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Hi!
I've just found that we have no information about some segments of chromosomes in the result data frames. For example one of our samples has a segment of chr6:304637-30185857 and chr6:30186422-33…
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Can we use it for targeted sequencing like 16S?
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**Is your feature request related to a problem? Please describe.**
We need to create a minimal cancer variant calling pipeline use case setup here
- https://github.com/bihealth/snappy-use-case-can…
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Hi,
I am using this tool to identify cnvs from wes data . I have 30 tumor/matched normal paired samples. As i am able to run this tool on individual tumor-normal paired samples using config.txt . I…
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Hi
I have `tumour only (WGS)`, from `human cell line` (24x)
I get this error
```
> res
```
Please could you help me with this error
```
> sessionInfo()
R version 4.4.0 (2024-0…
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**1. What were you trying to do?**
Get (and understand!) a packed coverage table from an alignment generated with GraphAligner against my variation graph.
I have a set of reads from a locus aligne…
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Hi @Meghana9854 @roseedwin , I just came across your amazing paper, and I wanted to implement the approach you proposed for my soil shotgun data. Looking upon your methodology, it seem you relied on a…
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Hello,
we are doing targeted sequencing using a Qiagen Kit. During library prep the dna is fragmented and tagged with UMI and a universal primer sequence at one end of the strand. So for the enric…