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### Describe the bug
can't decompile this sus code
### Expected Behaviour
decompiled code
### Code
```JavaScript
if(!Array.prototype.forEach){Array.prototype.forEach=function forEa…
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Not really an Issue, but a question.
Was https://github.com/jsh58/Genrich considered as a method to contrast against in your paper? If so, why was it rejected?
FWIW I have used it as recommende…
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Hi,
Various matrices are used in snapatac2's tutorial:
Features: creating a cell by bin matrix containing insertion counts across genome-wide 500-bp bins.
gene activity: generates cell by gene ac…
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Hi,
I really like the methodology of PRINT over every other footprinting tool, but at the moment I'm having trouble figuring out how to get output in a format that is comparable to other footprint…
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Similar to #16813 (unsure if related), this issue occurs when running dynamo exporter produced model w/ local functions. The fully inlined model runs successfully.
**NOTE that ORT must be built wit…
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Hello,
Is it possible to use TOBIAS without BAM files?
Briefly, I am looking to compare footprints between two pseudo bulk replicates derived from 10X scATAC where I have Cell Ranger ATAC fragme…
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Hi @jsh58
I have a question on Genrich ATAC-seq read shifting wrt peak calling.
I know that Genrich does the positional increase/decrease as appropriate. Some questions:
1. Most programs us…
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Hi,
How can I create pseudo-bulk atac count matrix? Also, during summing up the count data, do you binarize it?
Thank you,
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Hello all,
Thank you so much for your work on ChromBPNet!
I was wondering if you could help me to understand an error I am getting while running the pipeline.
This error happens during the AT…
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Hi,
Thanks for writing a really nice R package.
I am following the tutorial for loading data into Socrates, [here](https://htmlpreview.github.io/?https://github.com/plantformatics/Socrates/blob/…