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Dear BRAPeS developers,
I was trying to run BRAPeS on the example data but had no success. RSEM was installed with bioconda, and the version is 1.3.2.
The error message was "RSEM did not produc…
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I am encountering an error message during trinity run,
--------------- Inchworm ---------------------
-- (Linear contig construction from k-mers) --Running CMD: /home/iipr/trinityrnaseq-2.8.6/Inchwo…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/GoekeLab/bambu
Confirm the following by editing e…
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Dear authors,
Recently I was using your tool Mikado on my data. Below is my running commands:
mikado configure --list list.txt --reference genome.fa configuration.yaml
mikado prepare --json-con…
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Running `pdflatex` on the input
```
\documentclass{article}
\usepackage[greek]{babel}
\begin{document}
\(\&\)
\end{document}
```
prints the following to the log and to tty:
> LaTeX Warning: C…
ghost updated
4 years ago
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FusionInspector can be run in either 'inspect' or 'validate' mode when executed downstream from STAR-Fusion. *As of STAR-Fusion v1.1.0, FusionInspector is integrated into STAR-Fusion as a submodule.
…
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Hi, I finished the run, most reconstruction was successful. However, there is 153 failed transcripts reconstruction, are there any ways to rerun those failed ones as a batch file?
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**Topic:** Transcriptomics, Title: De-novo transcriptome reconstruction with RNA-Seq
**Tutorial Link:** http://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/de-novo/tutor…
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Hi,
Hi, I'm getting an error running the following command in PASA:
`perl Launch_PASA_pipeline.pl --config alignAssembly.config --ALIGNERS blat,gmap --create --run --genome genome.fasta --CPU 20…
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Hi,
I was looking for the denovo transcripts in finspector.gmap_trinity_GG.fusions.fasta and I couldn't find the transcripts for two fusions from STAR-Fusion: one being in-frame and other is not de…