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See title.
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Hi,
I downloaded the most recent NMR data from UKB-RAP (I did not use the ukbconv or ukbtools), and got the error when running the first function:
> decoded
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https://arxiv.org/pdf/1503.01655.pdf
In dictionary bulding section, I didn't find a description about how you deal with the multi-word expressions. How the tokenization and preprocessing of the …
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Hi @eugenegardner just wondering what the consequences of not applying any filter for the ALT/ALT genotypes would be. Very likely including false positive calls? Also do you have any idea why is this …
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The rule should just be: "Whatever the study's unique subject ID is for each subject, then THAT turned into an alphanumeric-only becomes the alphanumeric after `sub-` in the `participant_id` column."
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Hi Mingxuan,
Thanks a lot for your great work of XPASS and detailed examples.
I applied your software on our data with unknown population ancestry information, therefore, I chose the sd_method…
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Hi,
I am using your tool to calculate my own summary data from UKB. Because my raw data is the imputed genotype data, i used the UKB_imputed_SVD_eigen99_extraction as panel.
I have calculate about …
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Hi, I am trying to run GEM analysis, but it keeps showing an error about phenotype file. I have attached my code here. Do you know what is my problem here?
singularity exec \
> -B /humgen/ManningL…
lc491 updated
6 months ago
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**What**
Our implementation makes use of `Multiprocessing.queue` and more specifically `qsize` that is not implemented in OSX.
https://docs.python.org/2/library/multiprocessing.html#multiprocessing.…
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Demonstrating GPU cost efficiency and progressing on issues raised in https://github.com/pystatgen/sgkit/issues/390 may both be aided by creating a representative public workflow for UKB GWAS. A sing…