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hi,
I am trying to plot heatmap after identifying the marker genes, but the error shows that it can not start the png()
here is my code that I followed from the tutorial :
markersGS
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Hi ArchR team,
Thank you for developing this amazing R package. It is super useful! When I tried to run "addArchRAnnotations", the following error ocurrs:
`ArchR logging to : ArchRLogs/ArchR-addA…
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I followed the merging and QC tutorials, but the clustering solution that I'm getting does not make sense. I was using Signac ~6 months ago, and the clustering was okay back then. ArchR is also giving…
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I got the error :
unable to find an inherited method for function ‘seqnames’ for signature ‘"SummarizedExperiment"’
when I run addGeneExpressionMatrix .It is a bug in these packages
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Thanks a lot for developing this package.
I ran addGeneIntegrationMatrix() function taking a Seurat object (seRNA) as input.
# Below is the code I used:
projHeme2
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Good day!
I am having an error when using `getPositions`. I do not understand where the problem might be since I added successfully all motif annotations to the object and could plot them (e.g., `p…
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Hi,
I was wondering how exactly is the differential accessibility performed? The documentation (as far as I can see) is somewhat lacking in this respect. I tried reading the code but its not clear …
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Do not use this form to report a bug in ArchR! Instead, use the "Bug report" option.
Hi Developers,
We are working on a scATACseq dataset where we would like to map our identified clusters to ch…
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Dear authors,
I am trying to use ArchR for 10X Multiome analysis but I meet some problems which I don't know how to solve. I guess this problem may also exist in the scATAC-seq analysis but I didn'…
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I get the following error upon trying to compute doublet scores:
```
> doubScores