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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise 8.x
### Workflow Version
v2.0.0
### Workflow Execution
Other (please describe)
### EPI2ME Version
_N…
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04
### Workflow Version
v2.2.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No…
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**Describe the bug**
The plot is on the variants page but should be on genes. Also, displays nothing and not all exons.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to https://ree…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
v2.0.0-g52e3698
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
nex…
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The XML parser DSP used appears to put inner text as `$`, while `xmltodict` in python puts it as `#text` if there are attributes, and as the literal field value if there are no attributes (inconsisten…
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**Describe the bug**
After the refactoring of sequence and structural variants to store ready-to-display records in the database, the annotated variant display in the case overview does not work …
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It was noticed during the addition of the new "Flagged submission" review status that clinvar is NOT incrementing the version on the affected SCVs or VCVs which caused me to investigate further if thi…
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Should use a data tables grid, sort by date desc I guess, maybe summarise by counts/have a filter?
There is a variant in SA Path annotated 684 times
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**Is your feature request related to a problem? Please describe.**
[ClinCNV](https://github.com/imgag/ClinCNV) is a CNV caller from Tübingen. We do not support it yet.
**Describe the solution …
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Hi Lindsay,
I noticed that in the paper you stated "A variant is predicted to be an eQTL or GWAS hit if its log-odds is greater than 0.01 (eQTL) or 0.0075 (GWAS) ". However, in the CharacterizeVari…