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Is there a reason why an [undirected graph](https://github.com/msmexplorer/msmexplorer/blob/master/msmexplorer/plots/msm.py#L86) is built from the transition matrix in the `plot_msm_network` function?…
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1.17 MiB seems excessive. Can be optimized either by lazy loading or by cutting down on dependencies.
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This is an issue discussing how to migrate this app to DDS.
At the moment, this uses 2 Heroku features:
* S3 Bucketeer: A heroku add-on that manages a AWS S3 Storage Bucket for a heroku app.
* He…
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Double Byte Characters like the Scandinavians do not get importert correct with dot-app ...
Can you please update the libraries/parser to someting that support to support UTF-8 ...?
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### Current Situation
I made a "Comment" in a design and added a number of entries. This resulted in a validation error (with no details of the error).
### Proposed Change
Ensure strings vali…
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Hey,
First wanted to say, awesome work.
I'm attempting to use your library for the visualization of large scale biological graphical structures, namely looping DNA to individual regulatory elements,…
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Hello, thanks for the work, it is very nice to have a good looking layout algorithm for our graphs 👍
## Problem
I have a problem with compound nodes. When there are few of them, or few edges, f…
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@cannin @ozgunbabur there is a link associated with each node in the sif file. what will be its function in the visualization?
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CX format is used by cytoscape and ndexbio (https://www.ndexbio.org/). It would be useful to be able to export to CX from OAK, via the obograph model.
I envision this in two parts:
1. ensuring t…
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1) I was trying to call different functions of the Rcyjs package from the shiny app & till now everything is working fine except the layout() function.
Although It is not showing any error, but it …