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When I use stc.plot(), this function draws the brain as translucent, and it is seems very stange and the picture is poorly perceived.
Can you please tell me how to change the transparency parameter…
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### Description
AttributeError when using sct_deepseg_sc, following the tutorial [here](https://spinalcordtoolbox.com/user_section/tutorials/segmentation/sct_deepseg_sc-example-t1.html)
### Step…
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### Description
When running `sct_process_segmentation` an unexpected agument is given to the function `skimage.transform.pyramid_expand`, `channel_axis` in the API script `process_seg.py`.
See be…
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#### Describe the bug
the output of tfr_array_multitaper seems incorrect
#### Steps to reproduce
```
import mne.time_frequency as tfr
import numpy as np
import matplotlib.pyplot as plt
sign…
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I'm having issues occasionally aligning a CT to an MR image with the rigid transformations using `AffineRegistration`. I think this is because the optimization is greedy and gets stuck in a local mini…
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This has been originally reported at the following link: https://groups.google.com/g/cmtk-users/c/4L1RizsU2nw
**Reported Problems**
* Version `2.40` of `graphviz` does exist for windows machine…
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Can I show fiber with vtk after tracking?
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### Description
After a fresh clone, I tried to install SCT on our station `rosenberg` at NeuroPoly Lab, but encountered the following error:
Terminal output
```console
p101317@rosenberg:~/c…
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### Describe the bug
linear_regressions
developper
worked fine a few days ago
no mne update since
now bug
#### Steps to reproduce
```python
pred_vars = ['TOJ - SJ', 'N_1', 'intercept']
de…
virvw updated
2 years ago
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A brain mask is currently required to fit a model to data using the CLI (e.g., to `dipy_fit_dti`).
Maybe we should relax this requirement to make this an optional input? Any strong objections?