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Hi there,
Running the pipeline I run into a recursion error (see part of it below) that is related to `scipy`. I've tried setting the recursion limit in the conda environment created during the `sn…
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Hi there, very new to bioinformatics and trying to do analyze RNAseq reads of three similar species of yeast using cross mapper. I would like to see if this software can give an indication of whether …
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Hi,
I was trying to pull an asset but getting error. I have used the below command:
```
refgenie pull hg38/bowtie2_index
```
Here is the last three line of the error:
```
File "/usr/local/b…
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I'm trying to run PGAP on our local machine with 16 cores and 32 GB of ram, which for some reason comes out to 1.9 GB of ram per core. The MG37 dataset completed just fine, but I'm running into proble…
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I didn’t found a proper documentation that explain how each result in the nexclade output is generated and what it represent ?
Specifically the parameters qc.overallScore and qc.overallStatus.
C…
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Hi,
I have updated my PGAP installation to the above build. Unfortunately, the taxcheck feature fails when running the test using
./pgap.py -r --taxcheck-only --no-internet -o mg37_results test_ge…
mrztm updated
3 years ago
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Hi,
I have submitted an issue on HELEN repo ( [here is the link](https://github.com/kishwarshafin/helen/issues/31) ), and been suggested to here, I have tried pepper with bonito_microbial model, th…
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**Current Behavior**
When using the online Nextstrain, none of the B.1.1.7 or P.1 strains (18 all told) show up when sorting either the Global or North America databases, and using Oregon as the filt…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mdozmorov/excluderanges
Confirm the following by …
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Hi all,
I've seen a few whispers on the ABySS Google Groups pages indicating that it's possible to use Abyss for de novo assembly of whole exome (not genome) data. One thing Shaun has replied to a …