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Now we've streamlined the way we include disease associations it should be straight forward to copy and paste the configuration and data loading steps from PomBase to JaponicusDB.
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On Translator Relay call, SPOKE mention difficulties in mapping some types, e.g food, cell types.
In fact we have cell types: https://biolink.github.io/biolink-model/docs/Cell
Copied from Zoom …
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part_of relation missing between SNAP receptor and membrane fusion.
https://user-images.githubusercontent.com/7359272/92286477-15eac500-eeff-11ea-9c85-c509f13a23a2.png
https://github.com/pombase…
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## Background
We know some of the [original aims](https://docs.google.com/document/d/1eSCjQfR5BujtUYw4W2pYOL6rhPPMycJd8u95X1-5U7Q/edit#) for merging the Animal Behavior Ontology (ABO) with the NBO, b…
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Hello Evan. Thank you for creating this software, it has been really helpful. I'm having an issue with the map2gaf command and I don't know why. The gaf file is empty, and the log while i created is:
…
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In this [spreadsheet](https://docs.google.com/spreadsheets/d/1bpgF0FpnjbOzfH6bQXPP3ygRpme_MuP6-DOOMdTivu4/edit#gid=776147999) we have all relations used in annotation extensions, at least in WB and MG…
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For the CC only version of the form, as well as the MOD imports, we will need to specify that a Gene, Complex, or Protein can be 'located in' a Cellular Component:
` @` AND {
bl:category [GoGen…
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Taxon violations for fly annotations for GO:0014016 neuroblast differentiation and descendants:
GO:0014019 neuroblast development
GO:0014018 neuroblast fate specification
GO:0014017 neuroblast fate…
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Hi,
I recently tried eggnog-mapper website to annotate my bacterial genome for COG analysis. From the resulting output I was using the column of COG_categories to calculate the number of genes annota…
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# Overview
Right now we have code all over the place for creating Vitessce data/configs:
https://github.com/hubmapconsortium/portal-containers
https://github.com/hubmapconsortium/vitessce-data
h…