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I am trying to use latentvelo with my data and want to know how to install the module.
I have tried with pip install but is not working.
Would there be any recommended way to install 'latentvelo'?…
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Hi,
Thanks for your great work!
Does clustifyr support scanpy (another popular scRNAseq toolkit, python version of seurat) ?
And, some scRNA matrix are very large, it's very slow for R to read the …
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Hello!
I'm trying to do a GRN network analysis with my own dataset which consists on a single-cell Multiome experiment.
I am following the pipeline of https://morris-lab.github.io/CellOracle.docume…
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https://mp.weixin.qq.com/s/waGX23SEI08SIJuPSr1Cnw
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Hey,
I'm trying to run Demuxafy.sif popscle ,
Firstly I try to do without filter as say in the tutorial of Demuxafy : https://demultiplexing-doublet-detecting-docs.readthedocs.io/en/latest/DataPre…
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Hi,
I encountered an error when following the vignette "introduction to scRNA-seq integration".
When I run the line
`b.interferon.response
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Hi, I'm using the old version of spotlight, and when I analyzed some large spatial data (rds size ≈2.5G) and scRNA-seq data (rds size ≈2G) through computer cluster, I received the error like this:
…
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https://mp.weixin.qq.com/s/ML_IU5NvDMLqhpGlDTZ8Qg
ixxmu updated
10 months ago
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Hi there,
I am trying to get pciSeq 0.0.51 to run on our Merfish data, but I constantly run out of memory on a 150 GB Ram, 30 cpu job.
```
[2023-07-22 09:28:33] INFO (app.py:204) output_pa…
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I am trying to use Visium data. However, it seems ICELLNET do not support Visium RDS data as it shows an error when I am trying to implement this code:
`average.clean= sc.data.cleaning(object = seura…