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Hello,
I have installed Seqr on-prem. I have created a project and few families.
Yesterday I have run the command for loading a dataset, and it took few hours for the calculation. The calculation …
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**Describe the bug**
When we do variants search selecting Inheritance as 'Compound Heterozygous' and Pathogenicity as 'Clinvar -> Likely Benign' (for instance) then it crashes on the following line:
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Can we have IGV read support for the proband?
Case - https://seqr.broadinstitute.org/project/R0384_rare_genomes_project_gen/saved_variants/family/F027640_rgp_924/Review
Family specific issue.
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**Describe the bug**
A CN=0 in the proband does not show if either parent is not CN=1. Another way to put it is, if the parents are not het, seqr does not show homozygous SV in the proband as it mayb…
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**Describe the bug**
`local variable 'total_results' referenced before assignment' error when using the Recessive SV saved search on the Walsh_PMG project.
**Link to page(s) where bug is occurrin…
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**Describe the bug**
When we do variant search and then click last page (it occurs when we have over 100 pages) it crashes with the error:
**Unable to load more than 10000 variants (107900 request…
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When loading VCF into Seqr it is not immediately clear that the user might need to increase the 5G memory limits in the submit.py instructions/example in the readme.
It sure would be helpful to ne…
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**Describe the bug**
In the requirements.txt for the seqr pipeline, two Python packages are unsuccessfully installed. Those two packages are 'openpyxl' and 'psycopg2'. Attempting to install these pac…
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**Describe the bug**
Hi, when I try to start up the dockers for an on prem install with `docker-compose up -d seqr`
OS: Ubuntu 20.04
No other noted or appreciable services running on this serve…