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See the related issue (#6200) and its comments.
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The work is incredibly constructive, particularly for RFdiffusion, which traditionally struggles to produce stable short peptides in the range of 10 to 30 amino acids.
Despite this, after a week of …
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hi @durrantmm, I am preparing to predict smORFs within a length of 100 amino acids. Can the SmORFinder tool handle this task effectively? Alternatively, what modifications could I make to the script t…
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#### Current behavior:
50 genes are discovered to be uncorrelated with their corresponding reactions in `Transport reactions`.
| Gene| UniProtID| Reaction| GPR| Correlation| Manually check|
…
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* PIGT version:
* Python version:3.9
* Operating System:Debian 10
### Description
If I run any prediction and load the resulting pdb into Maestro instead of pymol, the import doesn't recognize a…
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- [ ] icons for all 20 canonical amino acids and protonation states
- [ ] coevolution
- [ ] salt bridge icon
- [ ] epistasis icon
- [ ] interaction network in protein
Inspiration
![image](h…
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I have a table of the masses of each amino acid and their names but there doesn't seem to be any easy way of getting the table in https://biojulia.net/BioSequences.jl/stable/symbols/#Amino-acids-1. So…
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Hello!
I recently discovered your GToTree and have found it super helpful for my master's project and your clear instillation and instructions have been a huge help in getting it too work on my lap…
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Hello,
I am a beginner in interpreting model results and I have three questions to ask:
First question: I see that the results output is focused on the evolution of single amino acids. Is there an…