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https://docs.microsoft.com/en-us/dotnet/api/system.security.cryptography.dsa.create?view=net-6.0
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Hi Andre,
I have managed to run GraphMB using CPUs but this took a long time on the large assemblies I have. I had issues running the same installation on the GPU, which I thought I had fixed by ch…
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I'm using Bandage v0.8.1 with the file `assembly_graph_with_scaffolds.gfa` (formerly `assembly_graph.gfa`) produded by SPAdes (don't know when this file was introduced).
At the end of the file, the…
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Not all files are described when I used `--keepfiles`. Could there be documentation for them, even if it's not in the main documentation? The additional files are the files I had after a skesa run. …
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First, let me just say how great this software is! I see great improvement over other mitochondrial genome assembly tools.
Now for the issue. I have pretty low coverage (average coverage < 20, av…
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Dear Ryan,
thanks for developing Bacsort. I'm trying to run it on a bunch of genomes from isolates and cluster_genera.py fails every time, but I can't interpret the error. Do you have any ideas or di…
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Apologies if I have missed a setup step. I installed successfully with conda and was able to run the test data fq without issue. If I input a fastq and run the output is empty. I've tried several diff…
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@willemneal @jtenner hi, i am experiencing a similar issue as @zimmah does in #364 .
The code can be found here: https://github.com/0xbe1/graph-ts-playground/pull/2
basically, in my example.spec…
0xbe1 updated
2 years ago
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Hi!
I have a weird error with roughly half of my samples when I run plASgraph2:
`Traceback (most recent call last):
File "/home/cs477/plASgraph2/src/plASgraph2_classify.py", line 149, in
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In the output GFA file (strainy_final.gfa), some unitigs in L lines do not have corresponding S lines. This may be due to attempting to remove the unitigs at some point (and removing their S lines) bu…