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Dear all,
I desperately try to start to analyze my tomography cryo-EM data with Warp collected a few months ago on a Krios in Heidelberg.
When I go through the first step, i.e I want to import my …
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`ImagePipeline`s and other cryojax objects should serialize to and deserialize from standard cryo-EM file formats, such as Relion starfiles.
mjo22 updated
5 months ago
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```
class ImagePrior:
def __init__(
self,
index_prior,
quaternion_prior,
delta_sigma_prior,
shift_prior,
defocus_prior,
b_factor_pr…
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Just wondering... is there any in-principle reason preventing `ContextImpl::initialize()` from running the initialization of each kernel in parallel? If it's possible, then `std::async` would make the…
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While reviewing https://github.com/ome/bioformats/pull/3975, I came across our documentation page at https://bio-formats.readthedocs.io/en/stable/formats/mrc.html and this raised a few questions.
T…
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Need to make sure that rasterized voxel grid scattering potentials have necessary factors out front so that their 2D projection images represent phase shifts in the exit plane. See function ReturnScat…
mjo22 updated
4 months ago
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Hi,
I am trying to do an NMA with an Electron-microscopy-map. Therefore I produce a pseudo-atom map (as pdb file)
this looks like:
REMARK xmipp_convert_vol2pseudo
REMARK fixedGaussian 8.000000
RE…
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興味深く拝見させております。
幅広い環境で利用出来るprogramをご準備頂き、大変ありがとうございました。
programは真面目で、丁寧に、記載されており、ご苦労が忍ばれます。
早速ですが、GANについて質問させてください。
深層学習に関してはkerasでU-netをいじっていた程度です。私はpython, pytorch もそれほど詳しくないので、難儀してます。
利用環境は…
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Following on from our offline discussion, opening a new ticket to discuss what an API might look like for implementations of (1) full PME simulations based on a small asymmetric unit (i.e. space group…