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Hi, I am trying to run and train the model on Windows, without the use of Linux, however under the requirement.txt requires Allennlp which is only available in Mac & Linux. Would like to ask if the mo…
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Many thanks for this great tool!
I need to map the original patient name to the anonymized name in order to include clinical data in my analysis. I am running in recursive mode with one input direc…
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I did a search in the github topics privacy-engineering and privacy-tools. There are already quite some tools ánd overviews that we could refer to.
Note: this is a preselection, I honestly have no…
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Colleague sent me this paper which also presents an overview of anonymisation tools: https://doi.org/10.1093/bib/bbac440
TODO:
- Read the paper
- Refine existing information about tools in overvi…
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## Adding a Dataset
- **Name:** n2c2 2014 - Deidentification & Heart Disease
- **Description:** *None provided*
- **Task:** NER,DOC_CLASS
- **Paper:** https://pubmed.ncbi.nlm.nih.gov/26225918/
- **Dat…
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- [x] #100
- [x] #103
- [x] Mark P/Joe/Steve H to finish looking at the de-identified reports in the current state
- [x] Steve to send summary to IG team & wait for response
- [x] Act on feedback f…
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This issue is to report bugs that were identified during testing of the ICEES PCD datasets (v2, Hong's first run).
- [ ] The 'index' variable is missing. This is used to link patients across years.…
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After clicking on + button, user is presented with blank modal box.
**To reproduce**
1. go to any dataset logged in as any user (even datasteward)
2. click on + button in Access section
**…
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Currently, the ADF pipeline is only able to execute on a single node, though that node can be of arbitrary size.
It takes us more than 48 hours to deidentify our entire set of FHIR resources. Sinc…
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Recently, interest in DEDUCE is increasing: I get more messages/requests/questions, downloads are increasing, the repository has become somewhat alive. This must mean more people are using clinical te…