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The maintenance burden to keep all contents synchronized across episode Markdown files, Jupyter notebooks and the solution Jupyter notebooks is considerable. Whenever a change is made to an episode, i…
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Hello Developers! I am running QC pipeline for my DTI files. However, I am facing issues with the execution. I have tried updating my packages to latest versions but still no help with the issue.
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The b0-normalisation with `dwinormalise` in
https://github.com/sotnir/NENAH-BIDS/blob/dc115bbff5fad52aa14938a0f693ae84dda8104f/dMRI/preprocess_QC.sh#L268-L291
should be replaced with a `mtnormalise…
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For gradient systems with significant non-linearities (e.g. connectome scanner, some 7T head-only systems), it is important to account for these as they not only lead to spatial distortion, but also s…
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- Understand well what Slicer and SlicerDMRI already can do.
- Think about how that affects the design of our Slicer modules
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I did a survey myself in July 2023, here is my summary.
Slicer has a…
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I believe I may have found a bug in the create_tbss_non_fa() dMRI workflow, or I was doing something completely wrong :)
When I ran this, and compared it with the FSL tbss_non_fa command, I kept get…
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Dear Zhang, I am Hou Xiaolin, a neurosurgeon from the Affiliated Hospital of Chengdu University of Traditional Chinese Medicine. I was lucky to see your Supwma study. I used your Git code. According t…
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Similar to https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/3612, this issue is used to keep track of progress on feedback/ideas received from the 2021 SCT Course:
### Planning/organiz…
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I have single shell (one b0 and 35 b1 volumens) data with low b-value (b1=1000). I applied common pre-processing steps (denoising, unringing, preproc and bias correction). I estimated the response fun…