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Hi everyone,
Do you think I can run make lastz chains in fragmented genomes? One has 757 scaffolds and the other has 60,750. I already used RAGTAG to improve the assembly and they are already maske…
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Test `mptp` with the new GCC 5 compiler that is becoming the new standard.
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Comment below with questions or thoughts about the reading for this week's workshop.
Please make your comments by Wednesday 11:59 PM, and upvote at least five of your peers' comments on Thursday pr…
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I compared the higher classification (above the genus level) in MDD to my classification, mostly in order to find additional places where my classification is out of date. There were surprisingly many…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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For all experiments, we will have (unless mentioned otherwise):
- number of MSA sites = 1000 * (number of displayed trees)
- perfect sampling: sites are sampled proportionally to the displayed tree …
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Dear Arjun Dhawan,
This is my first time with BEASTvntr. I am having many troubles getting mydata set running.
First, I get a messsage "WARNING: Frequencies has wrong size. Expected 34, but got 4"…
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Need alpha version of beta model ... goal to have fake data and model running by retreat (@dbuona )
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None of the FN plots have produced the Blue and Red overlays which would signify revolutions or conserved periods (as seen in "[On Revolutions](https://www.nature.com/articles/s41599-019-0371-1/figure…
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Similar to #9 but I can't solve it with regex. I downloaded the nextstrain tree (Jan 4, 2021) for nCov and wanted to run TreeToReads.py with it (newick attached below). However the seq-gen part give…