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## Description
## Reproduce
1. I use mobaXterm Gnome desktop logging into server big computing node,
2. Open Terminal, run jupyter lab. "http://localhost:8888" opend in Firefox bro…
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``` r
setwd("D:/PhD/Ragi")
library(readxl)
library(metan)
#> Registered S3 method overwritten by 'GGally':
#> method from
#> +.gg ggplot2
#> |==========================================…
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Awesome software!
We found an issue when, at the same time, we include a list of variants (`--include-snp-file`) and we filter according to MAF (`--maf 0.01`, for example) (genotypes are in BGEN fo…
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This is more of a question to understand how geoportal works and can be edited than a bug. I've been trying to explore the available folders and files, and noticed that it seems only Dublin Core and I…
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submission ID '62cd555a15ccca000139af50'.
I created a submission for this publication in the submission app using an old template without GxE columns.
Tried to add GxE columns in the depocuration app…
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I want to run a GWAS for a quantitative trait in UKBB on RAP and test for GxSex interaction. So in step 1, I included Sex as a covariate in the model with a bunch of other covariates. I realize that -…
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Dear GEM team,
I am wondering whether `--robust = 1` bring inflated result for rare variants compared with `--robust = 0`. Meanwhile, `--robust = 1` always have more significant results compared…
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Hello,
After I run the GxE analysis, I got total of three p-values including ADD-INT_SNPxTD=1, ADD-INT_SNPxTD=2 and ADD-INT_SNPxTD. Then I visualized these three kind of p-values and noticed that t…
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```
-- stderr: isaac_ros_nvengine
/usr/bin/ld:/workspaces/isaac_ros-dev/isaac_ros_nvengine/gxf/lib/gxf…
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Dear Tim,
We have recently put out a DoC variation that allows bidirectional causality and full confounding [here](https://www.biorxiv.org/content/10.1101/2022.03.14.484271v1) and I wanted to see i…