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I want to use the reference genome hg19 version for analysis,
The following error message is displayed
![image](https://github.com/DiltheyLab/HLA-LA/assets/160692531/c944ff5a-4a3a-4dbe-94fb-84d62d70…
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I have no issue running `extract` and `genotype` as part of my Snakemake pipeline. I am now testing adding `quant` to it.
My testing environment is a simple mamba env with only `arcasHLA` and its r…
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Hi,
The command `arcasHLA reference --version` fails for specific versions (it seems like every reference > `3.34.0`).
```
arcasHLA reference --version 3.35.0 -v
----------------------------…
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Hello,
Does HLA-LA support to update IMGT db ? or to use specific IMGT version ?
Best
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I am attempting to drizzle more than 32 images together. However, context maps appear to only support a maximum of 31 images (see links below) as they are cast to int32 data types. Is it possible to s…
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I am trying to use this tool to predict whether a specific CDR3b sequence binds to an antigen. However, when I run the pedict.py with just this information, it throws an error. I don't have MHC or H…
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I mapped my data to hg38 (reference is whole genome) and truncated a sub-dataset of only chr6 entries with following comment:
```
samtools view -b -h sample_sorted.bam chr6 > sample_sorted_chr6.bam
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_Issue [HLA-1284](https://jira.stsci.edu/browse/HLA-1284) was created on JIRA by [Rick White](https://jira.stsci.edu/secure/ViewProfile.jspa?name=rlw):_
Too many unused pixels that are filled with …
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Context:
This mainly comes about because .NET Core 3 does not support Distributed Transactions: https://github.com/dotnet/runtime/issues/715
The DataRefresh code and the ongoing DonorUpdate code…
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py-ARD doesn't seem to have a redux mode for first-field DNA nomenclature yet.
The current US organ allocation system supports all three of these HLA specificities: `DRB3*02:02`, `DRB3*02`, and `DR…