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#231 added support for variable mutation and recombination rates. It doesn't check for cases in which no solution for LS can be found (probably asserts out in the C case).
Once the code is updated …
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During the ingest pipeline, annotate the list of variants for rsid or top loci.
Nearest gene: This would be especially useful for the "top loci" page. Since these are a tiny fraction of the overall…
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Hi,
Is there a way to change y-axis label, instead of using default, -log(p)?
Many thanks!
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For some locations we seem to have LD showing alright, e.g. by HLA, while in other areas we aren't getting it for mostly (but will if we change to some other SNPs as the lead LD SNP, e.g. around TMEM1…
ttbek updated
3 years ago
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@awohns and I have a problem because the recombination map for human genome build 38, lifted over from build 37, contains the following first few lines for chromosome 21:
```
chrom pos recom…
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LocusZoom is limited from showing very large regions (or very dense datasets) by the need to render each element as SVG. We should explore ways to reduce the load on the DOM, given a lot of data. Eg:
…
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Hi,
I was wondering if it is possible to change the legend on the y-axis? The default is -log10 Pval. How do I go about changing that label?
Thank you,
Carmen
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## Purpose
The automatic credible set method will always rank SNPs, even if none of them in a given region are actually significant.
This can lead to misleading claims when there is no evidence …
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Add a reliable way to clean up plot instances when unmounting a LocusZoom component. This will be particularly useful for dynamic pages, or those that use multiple LocusZoom plot instances.
- Clear…
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### System details
Browser Version: NA
Output of `sessionInfo()`:
```
R version 3.5.1 (2018-07-02)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.5 LTS
Matrix produc…
ghost updated
4 years ago