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Hi,
I am calling SNPs in several dataset. I am giving a try to BCFtools mpileup and call to wgs-data. I was wondering if I could use the same approach with pool-seq data?
I could control for the plo…
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Hello, I'm interested in downloading metagenomic assemblies from MGNify in a programmatic manner. We've been testing out your API, but there seem to be inconsistent file naming patterns that make it d…
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**This is the main issue for adding metagenomics content to the workshop material**
The plan is that we have most of the material first in this repo and then we fork it for the GHPP SGS course end …
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The `|`s are getting escaped or even double escaped
see https://github.com/microbiomedata/submission-schema/blob/issue-18-water-patterns/examples/output/SampleData-water-data.regen.yaml
would ne…
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(Meta)-transcriptomics data is stored in European Nucleotide Archive, ENA. However, there is no counts table but only sequences ([example](https://www.ebi.ac.uk/ena/browser/view/SAMEA13929756?show=ana…
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Hi,
I'm having trouble downloading annotations from MG-RAST. Here's an example of the terminal output I got when trying to download MG-RAST sample ID 'mgm4824985.3'
```
> chordomics::launchApp(…
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Hi, I've been trying to set up the mar database for a metagenomics project, but I've been running into two odd issues:
1. Sometimes, when installing the database (I've found that this goes with all…
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Hi Casey et al.!
Steve told me that you're doing a review.
We have published on using multilayer recurrent neural networks for metagenomic samples: http://ieeexplore.ieee.org/document/7219432/?arnu…
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I am considering looking for overlapping genes in some viral metagenomes I obtained. I am not interested into the overlaps themselves but more into genes that I would have missed because of big overla…
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I used matR a couple years ago with no problem. I'm now trying to use it again to access another MG-Rast dataset, and I'm getting a peculiar error when I'm trying to set up my authorization key. I've …