-
Dear Developers
Your tool is very great. Today I have a new question. I'm using the wrapper tool to model multiple peptides at the same time. The peptides are reported in datafile.tsv and for each …
-
Hi, I wanted to express my appreciation for your exceptional work in developing the impressive tool NeoPredPipe. I have a question regarding its functionality: What is the source of the expression col…
-
I am very interested in these standards listed in the file fda_quality_thresholds.csv. However, I have been unable to locate a specific source or reference for these standards. Were these standards de…
-
Hi, I have been trying to run antigen garnish for a while with your testdata and now it seems to run fine with parallel and netMHC. The issue is that in the folder as e.g. ag_f236b988a09e438ea2 it doe…
-
Hello developer!
Thank you for the wonderful tool you put together.
I got an error which I don't know where it come from. Running test worked fine, but when I use the real data it results in this …
-
Hi there,
Firstly, I ran `GenerateScores.py` with below commands:
```
python ../src/GenerateScores.py ../examples/nmer_test_input.xlsx HLA-A02:01 HLA-A03:01 HLA-B13:02 HLA-B15:01 HLA-C05:01 HLA-C…
-
Dear developers of Pandora
Do you have any tips about modeling MHC-I 9mers of mut/wt peptides derived from Single nucleotide variants?
I have the following case of study
mut peptide:CVRVSGQ…
-
It seems that the current germline analysis is filtering out common SNPs via a GNOMAD filter here:
https://github.com/wustl-oncology/analysis-wdls/blob/773feeb3a02c90a5d0272e00232a4f1debb9bb3b/defi…
-
Hi there,
I was reading through your project and found it to be incredibly helpful for my research. However, I noticed that some datasets mentioned in your paper that are provided with source link.…
-
Hi,
So I have attached my output for the function "garnish_antigens" with the default parameters set in the user manual. I was trying to understand the meaning of all the columns as the manual doe…