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Hi, just looking for some advice -
I am looking at processing tumor-only PDX samples from targeted sequencing. I noticed this workflow on Cavatica and you mention using the Xenome tool for filteri…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Package ecosystem
docker, pip, actions
### Package manager version
_No response_
### Language v…
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To bump all modules to snakemake 8 (#12) we primarily need to document the libraries required to process the initial Snakemake file. These should be added to `envs/global.yaml` and cross-linked into t…
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### Bug Description
The above error occurs when typing sub and rr
```
[16:10:50.751] Reddit Browser[Script Filter] Queuing argument '(null)'
[16:10:51.839] Reddit Browser[Script Filter] Script wit…
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This is a continuation to https://github.com/ReproNim/sfn2018-training/pull/5, and I would like take my last comment back somewhat: I do not "like" the reprozip sub-section either at the beginning or …
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### What happened?
Hi.
I'm preprocessing 5 subjects' data using fieldmap-less distortion correction. However, some errors show up for 3 of the subjects:
240814-19:59:58,544 nipype.workflow ERROR…
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Adapt @ckoven's prototype python code to develop a FATES tool to process LUH2 data.
### Tasks
- [x] Convert Charlie's code to a module
- [x] Develop calling script
- [x] Generate conda environm…
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Provide a graphical tool to users that allows them to compare time periods selected in the UNCCD reporting workflow to visualize the impact of changing said periods on default data/estimates.
De…
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The README outlines the objective of creating open transport infrastructure data packs. That requires a reproducible data processing workflow supported by open source code. So far most of the work has…
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developed by Anthropic, is a cutting-edge AI model designed to enhance productivity and innovation through advanced natural language processing. It excels in various tasks, including data analysis,…