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A raw pubmed dataset has data like ind.pubmed.allx, ind.pubmed.ally.
How do I convert these data from raw pubmed datasets into data in /datasets/pubmed/ folder?
![image](https://github.c…
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First, thank you for your tool, it is very very useful.
I was wondering why there is a difference in the processing of list elements according to the parser used.
For instance:
- `parse_pubmed_xm…
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Hi team,
I am trying to parse some medline files I have using the demo'd code on the repo. However, when I run the below code:
```
import os
import pubmed_parser as pp
import pandas as pd
…
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Following [x.com/@fiamh](https://x.com/fiamh/status/1782261875876692322) I was made aware of the proposal for how to store modified base information in VCF files.
A quick search and I could not fin…
cjw85 updated
4 months ago
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PubMed provides information on the language of a publication. Unfortunately, this information is not extracted by the parser in the function `parse_xml_web()`.
pubmed_parser should parse the langua…
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Hi Team,
I want to download the PubMed abstract which is annotated with MeSH tags. How can I do this?
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Currently, in some functions, the argument taking the citations tibble is called `unique_citations` (e.g., `compare_sources()`) while is is simply named `citations` in others (e.g., `citation_summary_…
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| | Plugin Name | Description |
|------|:---------------------------…
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_ToDo: determine phd focus and scope_
Phd Funding project: https://www.tudelft.nl/en/2020/tu-delft/eur33m-research-funding-to-establish-trust-in-the-internet-economy
Duration: 1 Sep 2023 - 1 sep 2…
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This is an important issue, that is currently breaking our entire data pipeline.
For example, https://airflow.opentrials.net/admin/airflow/log?task_id=processor_nct&dag_id=run_all_processors&execut…