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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.9
- OS name and version (`lsb_release -ds`):
**To Reproduce**
Exact bcbio command you have used:
```
bcbio_nextgen.py /user…
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https://doi.org/10.1101/199315
>Single cell RNA sequencing (scRNA-seq) is a powerful technique to analyze the transcriptomic heterogeneities in single cell level. It is an important step for studyi…
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I am unable to install cellphonedb using the instructions on github and wanted to upload my data to your server for analysis. Could you please let me know when this will be available? Currently, I am…
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Hi!
Is it possible use SCNorm on a dataset without multiple conditions?
I receive an error that says I must `Must supply conditions.`
Thanks in advance for answering my query.
Best regard…
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Hi Dr. Zhang,
I read your Polarbear paper and planned to run the model on some multiomics data for the Human Brain to see how well your model performs on human brain tissue. Do you have a pretraine…
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Hi,
Could you tell me how to get package named "sir" in some notebooks of scRNA-Seq-invivo/analysis_pipeline directory.
I guess that the sir package means sir directory in the scRNA-Seq-invivo/analy…
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Dear @czarnewski
Thanks for your beautiful paper and code!
I want to use scRNA-seq data with cell type annotation to deconvolution my bulk RNA-seq.
But I only find scRNA-seq raw data and cod…
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Hello,
Thanks for making this tool. I have a quick question about the parameters involving cells.
User can input the number of cells expected in the run, and/or also input the list of cell barcod…
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@adkinsrs
scRNA-seq - Chicken basilar papilla (Heller 2021) and scRNA-seq - P2 cochlea (Heller 2021) have strange layouts.
![image](https://github.com/user-attachments/assets/dcc7c8e7-bd48-472d-84d…
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@mandichen
Hi,mandichen
Good job and I am very interested in your research, but I have some questions.I used the sample data BM2_v0s0_n_200.h5ad and Macosko_cell_cycle_genes.txt to get the follow…