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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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**Priority**: high
I previously created maps of the freeform cell type annotations provided by the original scRNA-seq dataset authors onto standardised, ontology-aligned Cell Ontology IDs and names…
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Thank you for the great pipeline! Following your intrinsic instructions, I have successfully run through the fantastic pipeline for Somatic SNV calling from scRNA-seq. However, I found that the cellS…
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The current scRNA-seq notebook 01 starts to get into pretty high memory usage of ~4Gb with multiple copies of the large count matrix under different filtering conditions, etc. It might be good to add …
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Hi!
Really cool package that's easy to use. I've already compared it to some prior selections using geneBasis and think I'd like to switch over. One of the things I'm I'd like to make sure I unders…
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Dear Giovanni,
Thank you for your nice software. I am using scAllele for the detection and analysis of variants using scRNA-seq. I wonder how you get the information about 0/1 or 1/1 in Figure 2E of …
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When there are multiple tissue sections in a Xenium experiment, it is often impossible to have them lie exactly along the XY axis.
Current rectangular crop function results in inclusion of other b…
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When I ran scMetabolism to quantify metabolic activity ，I met some problem：
library(Seurat)
library(scMetabolism)
scRNA dense coercion: allocating vector of size 5.9 GiB
Is there anyone encounter …
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Hello,
Thanks for making this tool. I have a quick question about the parameters involving cells.
User can input the number of cells expected in the run, and/or also input the list of cell barcod…
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Hi thanks for making a very cool package!
I have 10X scDNA-seq data with matched 10X scRNA-seq cells. I'm running Treealign for total CN with scDNA-seq clones already labelled. It's performing reas…