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Put together a Python script or Jupyter notebook which creates a set of plots which enables comparison of results from across the model runs.
List of plots required
Scenarios
- [x] population b…
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### Group
Dashnow Lab
### Contact info
Harriet Dashnow (she), PI, harriet.dashnow@cuanschutz.edu, Harriet Dashnow on Slack
Laurel Hiatt (they/he), project lead, MD/PhD student at U of Utah, …
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We would like to collect some graphs we want to have in the module :)
As discussed offline, Flo will share what graphs he already has in his design docs, and Ada and I will see where we go from the…
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I have a very basic question. Why do we need an alignment to map the vcf to a reference genome? When the vcf is generated, it is already aligned against a reference, so why align it again?
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This is a pretty core piece of functionality that I require for my plugin to function properly:
https://github.com/pfn/android-sdk-plugin/blob/master/src/VariantSettings.scala#L51
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Hi,
I am facing an issue regarding the reference path that pandora uses for genotyping the variants. It is basically using the less frequent supported path instead of most frequent supported path a…
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Please add suggestions / ideas here, and leave SACGF/variantgrid_private#277 for critical issues needed to get RUNX1 upgrade complete.
Sarah suggested:
An ultra cool feature (not nec. for now) w…
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### What is the expected enhancement?
Several methods on terra's `DAGCircuit` implement some variant of graph composition by topologically sorting one of the input graphs and appending its no…
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When building the GCSA2 index, new users are caught 100% of the time by the space explosion of kmer enumeration. `vg prune` is basically a requirement. At very least, we should have a pass that checks…
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Hydra's formal data model (Lambda Graph) includes a variant of Hindley-Milner type inference which has been adapted slightly for nominal types (records, unions, and wrappers). However, while λG concei…