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I found that CLO makes cross-references using the `rdfs:seeAlso` predicate instead of something a bit more fit-for-purpose like `oboInOwl:hasDbXref` or `skos:exactMatch`.
I also found that these `r…
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#1703 indicates a larger problem with namespace conflicts.
New projects should be encouraged (required?) to check for conflicts. Checking would be the easiest and most effective place to look curr…
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Charlie Hoyt seems to still maintain PyBEL; not sure how many people use it, but since it is fairly low effort, we could include a PyBel-BioCypher adapter. https://github.com/cthoyt
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Hello, looking at the content of Bgee, I was wondering, what ontology is PBA? The links out from specific pages like this link http://purl.obolibrary.org/obo/PBA_294022000 on this page https://bgee.or…
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### Additional comment:
_No response_
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As per conventions and pubmed itself, pubmed IDs should be prefixed with PMID:
Example page with a PMID: https://pubmed.ncbi.nlm.nih.gov/35189623/
## Blocked By
- [x] https://github.com/b…
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The `GOCHE:` terms in GO use an OBO namespace that has not been registered. I think this sets a bad example. I think we should try to register this namespace with OBO (describing it as a special circu…
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Noob question with probably a simple answer staring me in the face, but how can I determine which registry entires are formal ontologies vs. controlled vocabularies vs. databases/repositories vs. [oth…
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the uniprot obo file is actually just swissprot
```
grep -c '^id: uniprot:' ../obo-db-ingest/export/uniprot/2022_02/uniprot.obo
567483
```
which is useful in its own right, but it should be c…
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DO switched to using "MIM" prefixes instead of "OMIM" prefixes. We need to review how this change will affect Mondo ingest (and Mondo in general).
One aspect that will be affected is the exact lex…