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Hello,
You said, "3.2 million patches at 20× magnification" you get in the paper.
But I found some of it is at magnification 20x and the other is 40x(as in fig 1) after I checked the Camelyon16 da…
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I want to plot and calculate FROC for 3 WSIs (Test_001, Test_065, and Test_079 from Camelyon16), but the result is nan. I can't understand how do you calculate FROC.
We have a CSV file that shows co…
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Hi, My goal is to fine-tune a DINO 1st stage model from a checkpoint folder (vit256_small_dino.pth) using the Camelyon16 dataset. For an optimal solution, how many epochs are needed?
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Hi all,
Thanks for your work. All looks good except I have been trying for some time to reproduce your results. I just discovered the thread https://github.com/szc19990412/TransMIL/issues/4 where o…
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The directory of the camelyon16 dataset I downloaded is as follows. Where should I download the .pt files?
```
CAMELYON16
-training
-normal
-normal_xxx.tif
-turmor
…
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Hi @clemsgrs , I'm trying to use your HIPT implementation code with the CAMELYON16 dataset and having a few questions:
1. As TCGA and camelyon16 datasets are different, should I initialize the che…
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I am having a hard time downloading the CAMELYON16 dataset. Can anyone please provide a source from where you could download the dataset? Thanks.
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Hi @clemsgrs, could you let me know how to fix this error? When I print out self.wsi.properties, there is no "tiff.XResolution"
Also, should I modify filter_params.ref_patch_size (512) in default.y…
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FileNotFoundError: [Errno 2] No such file or directory: 'Camelyon16/pt_files/normal_102.pt'
ghost updated
2 years ago
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Hi, this is a great work for whole slide images. I see that in utils.py it mentions to use camelyonpatch_level_2_split_train_x.h5 for train. Is this file from PatchCamelyon? Because I check the PatchC…