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## Merging reads per hostplant
As a comparative measure against population based approach, we will assemble metagenomes using all CH and CO samples separately.
```
# New directory for hostplant …
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creates files one by one
```
Starting at Mon Jan 31 08:17:57 UTC 2022
date: invalid date ‘2022-1-32T2:0:00’
sleep: invalid option -- '1'
Try 'sleep --help' for more information.
./
./backup_2…
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-“spendable” needs to have the same decimals as “total”. This is especially important when sending funds, since it is the “spendable” that is displayed and used.
-also some people have requested to a…
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### Bug report
Pharmpy version: 0.110.0
The run stopped after iivsearch. Here is the error message:
/domus/h1/rosemary/.virtualenvs/r-reticulate/lib/python3.10/site-packages/pharmpy/tools/funcs/sum…
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@smachua could you look through the Climsoft database for tables that don't currently have primary keys and suggest which fields can make up the primary keys? In many cases these already have unique …
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Add the approach proposed here: https://arxiv.org/abs/2405.18875
### Tasks
- [x] Reproduce moons example from paper as far as possible
- [x] Complete integration into package
- [x] ~Make D…
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## Structured standard
After multiple different approaches i am now confident in an approach. To create a set standard, i will redo the scripts so the same analysis and structure is withheld unregard…
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For the rule breadth of coverage to work, MaltExtract first has to run in order to generate the results/AUTHENTICATION/{wildcards.sample}/{wildcards.taxid}/MaltExtract_output/default/readDist/{wildcar…
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First, all reads are merged.
We skip the CO_ and CH_ as they contain all reads for hostplant respectively.
```
ls -1 05-CLEAN-MERGED/* | paste - - | grep -v "CO_" | grep -v "CH_" > doc/all-clean-re…
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### Description of the bug
I have run Eukulele within the singularity container provided by pipeline and it seems like URI::Escape is missing in its perl installation, which is causing problems with …