-
Currently we have a few mentions of related works in the [introduction other works section](https://greenelab.github.io/connectivity-search-manuscript/v/a8e6b35298c4011dc06ae73fe6268ff97c89d3d0/#todo-…
-
We've now completed computing DWPCs and their corresponding DGP null distributions for all metapaths up to length 3 in Hetionet v1.0. We're working on building a database with this information in http…
-
We had a hetmech conference call today with @bdsullivan @cgreene @zietzm @kkloste and Drew van der Poel. @bdsullivan brought up the possibilities of using other methods than XSwap to create permuted h…
-
I'm reviewing the following OpenBioLinks manuscript for the journal _Bioinformatics_:
> **OpenBioLink: A resource and benchmarking framework for large-scale biomedical link prediction**
Anna Bre…
-
In addition to the four formats with which you're distributing, would you consider supporting [Biological Expression Language (BEL)](https://bel.bio/)?
If you're not familiar, BEL is another schema…
-
Hi,
Unfortunately I can't access Hetionet at https://neo4j.het.io/browser/
See screen-shots below:
![image](https://user-images.githubusercontent.com/54404970/65419826-d0bda800-ddff-11e9-9ac7-4d…
-
Refs #74
We would like to cache the DWPC matrices on disk, with the ability to rapidly read them. I looked into several different storage methods. HDF5 has a nice Python (somewhat) wrapper called …
-
The manuscript describes the creation of a new biomedical knowledge graph to use as a benchmark for link prediction. One of the first questions I had was the manuscript did not discuss previously prep…
-
Mapping from interaction types in Pathway Commons to BEL
-
Given the updated results and conclusions. This paper needs a new title. I'm opening up this issue as a discussion on possible paper titles:
Expanding Hetionet via Multi-Relation Extraction from Bi…