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Hi,
In MaSuRCA-3.2.7 the "Gap consensus" stage fails with the below error.
Not sure exactly how to fix this problem.
Thanks.
[Fri Aug 10 10:38:00 AEST 2018] Using linking mates
Using CABO…
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**The Bold forlmulae** is a forlmulae that exists in the old ORCA and absents in the new ORCA (brew list)
- [x] **cufflinks**
- [ ] **libdivsufsort**
- [ ] **perl518**
- [ ] **swig**
- [ ] **tex…
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**masurca version:4.0.3
os:centos8
platform:linux aarch64**
**When I perform an install.sh installation, the following error occurs,Does masurca support aarch64?**
```
make[1]: Entering directory…
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Dear @alekseyzimin,
I'm trying to assembly insect genome using trimmed illumina and trimmed nanopore data. I got the following errors in bold. However, the assembly in flye folder is succeeded, and t…
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During some runs with MaSuRCA-4.0.5 (compiled from release), a few core was produced.
Opening the core file with gdb indicated that
```
Program terminated with signal SIGSEGV, Segmentation faul…
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Hello Aleksey,
I was wondering if I could use Nanopore and Pacbio together for the hybrid assembly. We have about 70x pacbio, 20x long-read Nanopore, and ~ 100x Illumina for a 650 Mb genome. What …
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Hello Aleksey,
I am using masurca v. 4.1.0 to do a de novo assembly of a large (~3.4 Gb) vertebrate genome using a combination of short(100-150 bp) inward and matepair sequences and also low covera…
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Dear Professor Zimin,
I am using the two new features of MaSuRCA-3.3.4 and I have encountered a couple of issues. First of all, while using the masurca-polishing tool I was using full paths to execut…
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Let's say I have nodes with different number of cores in them.
Is it possible to make masurca use all cores on these machines in cluster or am I forced to use as many cores as the weakest machine has…
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Dear Aleksey,
I am testing the new version that I installed from conda: https://anaconda.org/bioconda/masurca
The pipeline worked well until the celera assembly started. Then it failed with an e…