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Hello,
I opened this thread in oder to discuss some parts of the MRI/DTI and later link it to the FEM computation.
So, I have started to work on some part of the DTI and I'm trying to understan…
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Dear All,
We use fMRIprep for a number of our studies. While it usually works quite well, we have found a problem in one study. This study uses a small FOV for EPIs (in the slice dimension). From …
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Hi,
I am trying to run fMRIprep on my data and it keeps crashing with the error below.
I can see that the erorr message says it can't read T2.norm.mgz, but I don't know why. The file does exist in…
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### Script/Job File
```
#!/bin/bash
#$ -pe smp 16
#$ -q UI
#$ -m bea
#$ -M adriana-rivera-dompenciel@uiowa.edu
#$ -o /Shared/vosslabhpc/Projects/CREST/code/fmriprep/out/
#$ -e /Shared/voss…
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This obviously is not an issue, but I did not know where else I could express my gratitude.
I just want to say very big thank you jps2000 for sharing the code and being so responsive. I went throu…
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Hi,
I needed to use the BIDS sidecar created by dcm2niix for one project, and unfortunately some information about DICOM data from a GE Signa (HDxt) scanner was missing. I am opening an issue here …
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Dear experts,
I am analysing DTI data, which I converted using MRICROGL . I am trying to find my readout time and I found the following problem:
1. According to my MRI technician, my readout tim…
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Some DWI series exported from a Siemens Skyra are not properly converted by _dcm2niix_: no bvec/bval files are created. Other DWI series from the same scanner do get properly converted. More on differ…
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From Winok::
```
ERROR: 0-dimensional array given. Array must be at least two-dimensional
Traceback (most recent call last):
File "/home/fs0/winokl/Programmes/oxasl/oxasl/oxford_asl.py", line …
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Hello,
I'm confused on the freesurfer running for the last three subjects, all time run this step: **resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortpar…