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During our recent ansible configuration of OMERO I had to do some less than desirable things to make it work because some of the configuration can not be done idempotently.
Examples:
When configurin…
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Current status:
- Users can choose to load 1 OMERO.table and/or Key-Value pairs or Dataset Names for Images within a Project
- KVPs and Dataset names are copied to an MDV-project json file in "MDV…
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See https://omero-guides.readthedocs.io/projects/fiji/ and https://github.com/ome/omero-guide-fiji/
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**PHASE I** (Jan 2022)
Current build is failing due to old version of Jenkins docker image. Main goal of this work is to have an updated working environment to test scl python 3.8 on CentOS 7
Seve…
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See https://forum.image.sc/t/omere-figure-export-pdf-does-not-work/39573/30
On release, we should update the omero-server Docker with the Pdf export script, as well as the omero-web Docker.
That w…
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Currently the OMERO web api doesn't provide raw pixel data.
Pixel data in the form of [OME-Zarr v0.1](https://ngff.openmicroscopy.org/0.1/index.html) can be provided by [omero-ms-zarr](https://github…
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See https://github.com/tlambert03/napari-omero/pull/17#pullrequestreview-441080882
Use [`napari_write_shapes`](https://napari.org/docs/plugins/hook_specifications.html#napari.plugins.hook_specificat…
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The Zarr HTTP microservice could enforce OMERO permissions. A simple but effective version might have the microservice provide its pixels service a `ReaderSecurityCheck` validating, say, a short token…
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In an attempt to deploy PG+OMERO with the minimal characters on the CLI, I tried:
```
docker run -d --name db -e POSTGRES_USER=omero -e POSTGRES_PASSWORD=omero postgres
docker run --rm --link db …
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## Motivation
https://github.com/ome/omero-web/pull/505 proposes to either outright change or add additional configuration settings to control the scripts and activities buttons in the UI.
While…