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- Should we do L0 verification of blocks without context?
- We can calculate deltas
- Some event data doesn’t coalesce well (i.e. Witness events)
- But two timestamps do.
- Should events within a …
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Hello there and thanks for bamUtil.
I have an enhancement request: when using bamUtil for massaging of BAM files one real bottleneck seems to be the recalibration step (`bam recab`), because it canno…
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Asking here as I don't know where else:
I would like to use parallel processing with the snakemake wrapper for Bismark.
From the wrapper documentation it did not become clear what I should do. I …
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When processing a directory, things can be parallelized:
- Parsing individual files can be performed by a thread pool. Generating an AST and event stream for each file can be completely parallelized. …
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In [E-Lotos](http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.38.7130&rep=rep1&type=pdf) an example is given that I can't write down in TorXakis.
```
par
G1, G3 -> B1
||
G1, G4 -> B…
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**Describe the bug**
I am trying to set up parallel processing in my R code. I get an inexplicable error. I am running R 4.4.2 inside Ubuntu and Fedora containers running on Aurora 41, a "spin" of Fe…
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It looks like a couple steps (namely control flow optimization, constants optimization, and C++ class hierarchy optimization) are bottlenecked by CPU (as opposed to memory). Per #51, everything is cur…
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I have a 16 core system. It's quite slow and wasteful to analyze all files single-threaded when trying to tag large folders.
How difficult would it be to add a bit of parallel processing to speed t…
haasn updated
3 years ago
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Hi!
I have a big matrice to test for mututal exclusive events with TiMEx. I would like to know if I could use parallel (https://stat.ethz.ch/R-manual/R-devel/library/parallel/doc/parallel.pdf) to inc…
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Some students have need for threading in their final project, so the repo should provide some notes about parallel processing, using the concurrent futures module.
### References
Threads and Th…