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Some users **really** need a way to access raw pixels, e.g. see https://forum.image.sc/t/omero-extension-in-qupath-working-with-raw-pixel-data-fluorescent-images/52649/2
Although OME-Zarr is likely…
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If you render a WSI and zoom as far in as you can, you will observe that you are unable to zoom out again. The rendered image just becomes black, and completely stops the user from further interacting…
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Probably there's way too many things being fetched from the server.
Example URL (internal BIOP EPFL):
https://omero.epfl.ch/webclient/?show=image-511517
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i tried API Server url http://localhost:8000/ and http://localhost:8000/ sam/ , they both did not work
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Hi,
I've been trying to install cellsparse tu run it within QuPath. I'm running a Windows PC and I use QuPath 0.4.3 (I also tested QuPath 0.4.4, got the same problem) and qupath-extension-cellspars…
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![image](https://github.com/BIOP/biop-bash-scripts/assets/9995678/84517f17-9f90-4908-bc3c-79814c4db78d)
![image](https://github.com/BIOP/biop-bash-scripts/assets/9995678/cc8d5cfc-e47b-4f18-bbe8-f8254…
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Hi,
Is there any ongoing work to add JPEG XL compression support for the OME-TIFF (ome.tif) format. In my experience, I’ve achieved about a 50% size reduction with this reasonable settings: {“level…
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## Bug report
**Describe the bug**
We try to add a qpproj file in another one to import all images. The checkbox "Import objects" was unchecked but all objects have been imported.
**To Reproduc…
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Hello,
when iterating over the images of a large project (>200 mirax WSIs), memory is allocated but never freed until I get a `java.lang.OutOfMemoryError: java.lang.OutOfMemoryError: Java heap spac…
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When I run Abba on Ubuntu 22.04.2LTs I get this error :
```java
ch.systemsx.cisd.hdf5.exceptions.HDF5FileNotFoundException: Path does not exit. (/home/user/cached_atlas/WHS_SD_rat_atlas_v4_b.xml/..\…