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> ... more than one cell ( or cell debris from other cells ) are being sequenced...
are -> is.
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To normalize using ERCC spike-ins, you need to use `computeSpikeFactors` after setting `isSpike`:
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I have been trying to quantify spontaneous Ca recordings in the Olfactory bulb, when i came across your very attractive code on Github, fast-oopsi.
As I am new to the concept of spike deconvolution, i…
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Hi!
I assume that the C_df output is the DF/F trace for each cell but I'm not sure how to extract the deconvolved spike rate from the data. The dataset contains about 300-400 neurons imagined with a 1…
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A while ago, I noticed regular load spikes on my machine. Investigating this issue further, I registered spikes of ~5.5 every 125 minutes. After reducing the size of my script, the spikes reduced to ~…
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The following sections will be moved into the supplements:
- In depth explanation of the deconvolution method 3.3-3.5 (p6-8)
- Spike-In stuff 4.4 (p12-13)
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Originally reported on Google Code with ID 1246
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When RL Deconvolution AND Edges are both enabled, AND the number of iterations for RL
Deconv is set to any value but the default of 5, the output i…