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Thank you for your excellent work!
I run this code on my own dataset about bladder tumor but I get very poor results. I guess the reason may be that my dataset is too small, resulting in overfittin…
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In your paper, the dice of nnU-Net on KiTS21 is 73.07
![截屏2023-07-24 下午5 57 00](https://github.com/med-air/3DSAM-adapter/assets/25132958/14d55866-ab72-4203-a1ad-4382193ed438)
However, the dice rep…
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Hi @micknudsen,
thanks for providing your code for the transformation of GATK outputs as inputs for ASCAT.
I am trying to adapt this to our current pipeline in which we analyze WXS/WGS data with…
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Hey,
I wonder how can I cite the dataset? is any paper or specific url for citation of this challenge?
Thanks in advance,
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Hi,
For each study I have one 3D CT file and one segmentation file with multiple ROIs. I have two questions: 1- How can I know how many ROIs are in the segmenation file. 2- How can I extract radiomi…
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Hello,
Did you apply the survival prediction on slide level or patient level? If it is on patient level can you please let me know how did you convert the slide level prediction to patient level pr…
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Hi!
We've tried to use FACETS to call genome wide CNAs in a paired tumor-normal case, but we are not sure about optimizing parameters like ndepth, snp.nbhd etc. to get reliable segmentation and CN …
BZ532 updated
5 years ago
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Hello, I'm fairly new to Albumentations and it great! I have reviewed the documentation and I'm not sure which function is applicable to CT Image. Now I'm trying to select some operations to build a s…
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Can you tell me the environment such as edition of tensorflow?
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when I use ISOWN to analyais tumor only somatic data, it was interrupted when step1 was performed. Check the cause,I found it breaks when analysis qpipeline tabix .
cmmond:/software/ISOWN/ISOWN/bi…