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I’m working on fine-tuning micro-sam on some fluorescence imaging of myotubes. For prototyping my pipeline, I’ve downloaded the image data associated with the [MyoCount paper [Murphy et al. 2019]](htt…
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Hello,
Thank you for your work! I attempted to use the SegMamba model from your code for segmenting single-channel 3D liver tumors. However, when testing on the same dataset, the dice were slightly…
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### 🐛 Describe the bug
When trying to export the SwinUNETR model from [MONAI](https://github.com/Project-MONAI/MONAI/blob/dev/monai/networks/nets/swin_unetr.py), I get the error:
```
RuntimeError: …
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Following #52 .
Training script crashes with our contrasts other than T1w, especially a problem when trying to train multi-contrast. The issue is related to a shape mismatch between what the model…
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(C:\Users\m197816\AppData\Local\micro_sam) C:\Users\m197816\micro-sam>micro_sam.annotator
Traceback (most recent call last):
File "", line 198, in _run_module_as_main
File "", line 88, in _run_…
Nal44 updated
9 months ago
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Hello author, I'm really sorry, I want to ask a question about the ACDC dataset, the test set used by UNETR++ is 'patient089_frame01', 'patient089_frame10'
Does this count as one? However, there are …
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Here is the error report when I trying to reproduce your experiment. Please help me!
Traceback (most recent call last):
File "MI-Seg-master\train.py", line 83, in
main(args)
File "MI-Seg-…
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I'm unable to load SwinTransformers from the swin_unetr.py. The script just gets killed everytime SwinTransformers are being used inside it.
In the interactive, the kernel crashes everytime t…
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Hi,
I am now fintuning on livecell dataset using modified livelcell_finetuning.py script. I used default SAM architecture without unetr decoder. I was confused about label_transform parameter. I hav…
JIBSN updated
8 months ago
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Traceback (most recent call last):
File "../unetr_pp/run/run_training.py", line 171, in
main()
File "../unetr_pp/run/run_training.py", line 142, in main
trainer.initialize(not validation_only)
…