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## Is your feature request related to a problem? ##
If I want to use MDAnalysis when I use desmond as the MD engine I have to convert it to some other format and then read that other format.
## De…
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I was exploring the app TDEM_HorizontalLoop_LayeredEarth. The parameters that I used are summarized in the following figure.
![tdem](https://user-images.githubusercontent.com/379368/46637074-2d0cb680…
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When compiling vmd as a shared library (https://github.com/Eigenstate/vmd-python), the lammpsdata plugin does not work properly with CGCMM-styled lammps-data files - the std::bad_array_new_length exce…
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I'm trying to use this plugin to visualize particles with variable radius, but I'm encountering some trouble setting it up. I'm pasting the instructions you provided in the vmd mailing list at some po…
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Dear Mr. Wang,
Thank you for your contributions to the analysis of contact angles. I also have similar analysis recently and would like to refer to the work in your literature. Now I have some pro…
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```
DCD trajectory support is needed for native NAMD support. Unfortunately, DCD is
a very complicated format.
I guess the easiest would be to copy vmd* from the gromacs sources and change
the func…
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`Molecule.atomselect` doesn't recognize `numbonds`. This is a deviation from the original VMD implementation (https://www.ks.uiuc.edu/Research/vmd/vmd-1.9/ug/node87.html)
```python
from moleculeki…
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The current 3.x driver may work, but is less ideal.
Windows 95 DDK suggests the entire stack seems to have moved into VMD instead; also niceties like `VMD_Post_Absolute_Pointer_Message`.
Of cour…
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训练代码如下:
> kr = cl.keras_predictor(PATH='./', NEXT_DAY=True)
df_result = kr.hybrid_keras_predict(data, show=True, plot=True, save=True)
print('-------------------------------df_result-------…
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Hi.
In blender 2.82, If seems like the plugin couldn't convert the group morphs into shape keys in order for the model's face to morph, since I was trying to use the a different models which uses i…