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Any reason why this is not under "system process"?
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/loosolab/multicrispr
Confirm the following by edi…
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Dear Kyle,
Thank you so much for your last valuable answer.
I have used STSS.py to search anti CRISPR in Listeria monocytogenes and Pseudomonas aeruginosa, but it crashes when STSS.py tries to do…
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After I run ./test.sh,the result shows:
_diff -s test/known_results/CRISPR-Cas_Subtype_summary.csv test/test_output/CRISPR-Cas_Subtype_summary.csv
3c3
< 1,TypeI-B,2
---
> 1,TypeI-B,0
9c9
< 7,Ty…
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The plant people I am talking to state that plants only have innate immunity.
Therefore can we have a taxon constraint on
https://www.ebi.ac.uk/QuickGO/term/GO:0002250
GO:0002250 adaptive i…
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**Input**: "_python2 STSS.py --Accs assemblies.txt_"
**assemblies.txt content**: _GCF_000005845.2_
**Output error**:
""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""…
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## Motivation
Some phages carry anti-CRISPR genes which are capable of deactivating a CRISPR-Cas defense system in bacteria. Fun fact: anti-CRISPRs were discovered at the University of Toronto! Her…
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PhageParser could really use a sweet logo! Someone with graphic design interest or experience, can we talk about what that might look like? I don't have many ideas myself, but maybe it could incorpora…
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We want to store detected *cas* genes in the database so that we can determine CRISPR type based on them. Update [`models.py`](https://github.com/phageParser/phageParser/blob/django-dev/phageAPI/resta…
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The recent classification standard for CRISPR-Cas systems provided a list of protein profiles that we can use to find *cas* genes in bacteria and archaea.
* [x] Extract translations from downloade…