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I get the same alleles hla a_01_01_01, hla b_07_02_01 and hla c_01_02_01 when I run WES bam files from different individuals. When I run the test.bam, only hla c second winner did not match with the o…
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_Issue [HLA-1236](https://jira.stsci.edu/browse/HLA-1236) was created on JIRA by [Rick White](https://jira.stsci.edu/secure/ViewProfile.jspa?name=rlw):_
I noticed a couple of cases where HAP-SVM co…
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Hi there,
I am trying to quantify a particular allele in a `scRNA-seq` dataset. I found this allele `A*03:04:01` in `Allelelist.txt` and `hla_nuc.fasta`, but not in `hla_gen.fasta`. Which sequence…
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`HLA-A*25:03 protein complex` & `HLA-C*02:10 protein complex` are showing up in the incorrect branch of MHC class II protein complex.
`HLA-DQA1*01:02/DRB1*15:01 protein complex` should be a child of …
rvita updated
4 years ago
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I pull your docker image from docker hub, as a newcomer, I triecd to run it by the command below, but nomatter how hard I try, I always encounter this error, can you help me solve it.
docker run b…
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Hi - I stumble upon your tool HLApers and the associated library hlaseqlib. I find the method `hla_read_alignment` quite interesting as you know, the IMGT database does not contain the complete sequen…
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Traceback (most recent call last):
File "/gfe/seq2gfe", line 88, in
main()
File "/gfe/seq2gfe", line 67, in main
ann = seqann.annotate(seq, loc)
File "/usr/local/lib/python3.7/site…
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Hi Alex,
Could it be possible for you to provide a clean docker image with HLA-PRG-LA, to avoid having troubles with software installation ?
There's one working well for HLA-PRG (https://hub.docke…
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IMGT/HLA version 3.22.0 at appears to have been loaded correctly, except locus HLA-A cannot be retrieved from the service
https://gl.nmdp.org/imgt-hla/3.22.0/locus/0.html
returns
`Locus not found`
…
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What may treat [Mucocutaneous Lymph Node Syndrome](http://purl.obolibrary.org/obo/MONDO_0012727)? (Matched from Kawasaki disease)
https://ui.test.transltr.io/main/results?l=Mucocutaneous%20Lymph%20…